Higra
stable
Informations
Changelog
0.6.7
0.6.6
0.6.5
0.6.4
0.6.2
0.6.1
Breaking changes
Other changes
0.6.0
Breaking changes
Other changes
0.5.3
0.5.2
0.5.1
0.5.0
Breaking change
Other changes
0.4.5
0.4.4
0.4.2
Breaking change
Other changes
0.4.1
0.4.0
Breaking change
Other changes
0.3.8
0.3.7
0.3.6
0.3.5
Breaking change
Other changes
0.3.4
0.3.3
0.3.2
0.3.1
0.3.0
Breaking change
Other changes
Installation
Pre-build binaries
Manual build
With cmake
Cmake options:
With setuptools
Developing c++ extensions
Examples
Component trees
Hierarchical segmentation
Triangular meshes
Useful tools
Illustrative applications from scientific papers
Troubleshooting
Fundamentals
Graphs
Vertices
Iterating on vertices
Edges
Iterating on edges
Degrees
Weighted graph
Trees
Constructor
Basic functions
Iterators
Children relation
Finding nodes
Accumulators
Parallel accumulator
Sequential accumulator
Sequential and combine accumulator
Propagators
Conditional parallel propagator
Conditional sequential propagator
Sequential propagate and accumulate
Conditional sequential propagate and accumulate
Python API
Hierarchy core functions
Hierarchy construction algorithms
Binary partition hierarchy
Component tree
Constrained connectivity hierarchy
Random hierarchy
Watershed hierarchy
Hierarchy processing algorithms
Alignment
Horizontal cut
Tree accumulators
Tree algorithms
Tree attributes
Tree energy optimization
Quality Assessment
Hierarchical cost
Hierarchy fragmentation curve
Partition score
Graph processing algorithms
Bipartite graph
Graph accumulators
Graph attributes
Graph core
Graph weighting
Region adjacency graph
Watershed
Data structures
Accumulators
Concepts
EmbeddingGrid
LCAFast
RegularGraph
Tree
UndirectedGraph
Interoperability
SciPy
Image applications
Contour 2d modelisation
Graph image
Mean probability boundary hierarchy
Tree of shapes
IO
Pink Graph
Tree IO
Plotting
Misc
Data cache
Utility functions
c++ API
Arrays
Quick start
Creating arrays
Properties
Element access
Display
Lazy Evaluation
HG namespace
Contributing
Contributing
Working on the C++ backend
Working on the Python frontend
Pushing a new version
Higra
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Index
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Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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V
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W
_
__eq__() (OptimalCutMeasure method)
__getitem__() (Contour2d method)
(ContourSegment2d method)
(PolylineContour2d method)
__getstate__() (OptimalCutMeasure method)
__hash__() (OptimalCutMeasure method)
__index__() (OptimalCutMeasure method)
__init__() (Contour2d method)
(ContourSegment2d method)
(EmbeddingGrid2d method)
(FragmentationCurve method)
(HorizontalCutNodes method)
(OptimalCutMeasure method)
(PolylineContour2d method)
(RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
__int__() (OptimalCutMeasure method)
__iter__() (Contour2d method)
(ContourSegment2d method)
(PolylineContour2d method)
__len__() (Contour2d method)
(ContourSegment2d method)
(PolylineContour2d method)
__members__ (OptimalCutMeasure attribute)
__module__ (OptimalCutMeasure attribute)
__ne__() (OptimalCutMeasure method)
__new__() (HorizontalCutExplorer method)
__repr__() (OptimalCutMeasure method)
__setstate__() (OptimalCutMeasure method)
__str__() (OptimalCutMeasure method)
A
accumulate_and_add_sequential() (in module higra)
accumulate_and_max_sequential() (in module higra)
accumulate_and_min_sequential() (in module higra)
accumulate_and_multiply_sequential() (in module higra)
accumulate_at() (in module higra)
accumulate_graph_edges() (in module higra)
accumulate_graph_vertices() (in module higra)
accumulate_on_contours() (in module higra)
accumulate_parallel() (in module higra)
accumulate_sequential() (in module higra)
Accumulators (class in higra)
add_edge() (UndirectedGraph method)
add_edges() (UndirectedGraph method)
add_vertex() (UndirectedGraph method)
add_vertices() (UndirectedGraph method)
adjacency_matrix_2_undirected_graph() (in module higra)
adjacent_vertices() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
align_hierarchies() (in module higra)
altitude() (HorizontalCutNodes method)
altitude_cut() (HorizontalCutExplorer method)
altitude_cuts() (HorizontalCutExplorer method)
ancestors() (Tree method)
angle() (ContourSegment2d method)
arg_sort() (in module higra)
argmax (Accumulators attribute)
argmin (Accumulators attribute)
as_explicit_graph() (RegularGraph2d method)
assess_fragmentation_horizontal_cut() (in module higra)
assess_fragmentation_optimal_cut() (in module higra)
assess_partition() (in module higra)
AssesserFragmentationOptimalCut (class in higra)
attribute_area() (in module higra)
attribute_child_number() (in module higra)
attribute_children_pair_sum_product() (in module higra)
attribute_compactness() (in module higra)
attribute_contour_length() (in module higra)
attribute_contour_strength() (in module higra)
attribute_depth() (in module higra)
attribute_dynamics() (in module higra)
attribute_edge_length() (in module higra)
attribute_extinction_value() (in module higra)
attribute_extrema() (in module higra)
attribute_frontier_length() (in module higra)
attribute_frontier_strength() (in module higra)
attribute_gaussian_region_weights_model() (in module higra)
attribute_height() (in module higra)
attribute_lca_map() (in module higra)
attribute_mean_vertex_weights() (in module higra)
attribute_moment_of_inertia() (in module higra)
attribute_piecewise_constant_Mumford_Shah_energy() (in module higra)
attribute_regular_altitudes() (in module higra)
attribute_sibling() (in module higra)
attribute_topological_height() (in module higra)
attribute_tree_sampling_probability() (in module higra)
attribute_vertex_area() (in module higra)
attribute_vertex_coordinates() (in module higra)
attribute_vertex_list() (in module higra)
attribute_vertex_perimeter() (in module higra)
attribute_volume() (in module higra)
auto_cache() (in module higra)
B
BCE (OptimalCutMeasure attribute)
(PartitionMeasure attribute)
binary_hierarchy_to_scipy_linkage_matrix() (in module higra)
binary_labelisation_from_markers() (in module higra)
binary_partition_tree() (in module higra)
binary_partition_tree_average_linkage() (in module higra)
binary_partition_tree_complete_linkage() (in module higra)
binary_partition_tree_exponential_linkage() (in module higra)
binary_partition_tree_MumfordShah_energy() (in module higra)
binary_partition_tree_single_linkage() (in module higra)
binary_partition_tree_ward_linkage() (in module higra)
bipartite_graph_matching() (in module higra)
bpt_canonical() (in module higra)
C
canonize_hierarchy() (in module higra)
cast_to_common_type() (in module higra)
cast_to_dtype() (in module higra)
category() (Tree method)
child() (Tree method)
children() (Tree method)
clear_auto_cache() (in module higra)
clear_children() (Tree method)
common_type() (in module higra)
component_tree_max_tree() (in module higra)
component_tree_min_tree() (in module higra)
component_tree_multivariate_tree_of_shapes_image2d() (in module higra)
component_tree_tree_of_shapes_image2d() (in module higra)
ComponentTree (TreeCategory attribute)
Concept (class in higra)
constrained_connectivity_hierarchy_alpha_omega() (in module higra)
constrained_connectivity_hierarchy_strong_connection() (in module higra)
construct() (Concept class method)
contains() (EmbeddingGrid2d method)
Contour2d (class in higra)
ContourSegment2d (class in higra)
counter (Accumulators attribute)
CptBinaryHierarchy (class in higra)
CptGridGraph (class in higra)
CptHierarchy (class in higra)
CptMinimumSpanningTree (class in higra)
CptRegionAdjacencyGraph (class in higra)
D
dasgupta_cost() (in module higra)
DCovering (OptimalCutMeasure attribute)
(PartitionMeasure attribute)
degree() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
delinearize_vertex_weights() (in module higra)
dendrogram_purity() (in module higra)
description() (Concept class method)
DHamming (OptimalCutMeasure attribute)
(PartitionMeasure attribute)
dimension() (EmbeddingGrid2d method)
distance_to_point() (ContourSegment2d method)
dtype_info() (in module higra)
E
edge_from_index() (Tree method)
(UndirectedGraph method)
edge_list() (Tree method)
(UndirectedGraph method)
edges() (Tree method)
(UndirectedGraph method)
EmbeddingGrid2d (class in higra)
extend_class() (in module higra)
F
filter_non_relevant_node_from_tree() (in module higra)
filter_small_nodes_from_tree() (in module higra)
filter_weak_frontier_nodes_from_tree() (in module higra)
find_region() (Tree method)
first (Accumulators attribute)
fit_contour_2d() (in module higra)
fragmentation_curve() (AssesserFragmentationOptimalCut method)
FragmentationCurve (class in higra)
G
get_4_adjacency_graph() (in module higra)
get_4_adjacency_implicit_graph() (in module higra)
get_8_adjacency_graph() (in module higra)
get_8_adjacency_implicit_graph() (in module higra)
get_attribute() (in module higra)
get_auto_cache_state() (in module higra)
get_base_graph() (CptMinimumSpanningTree static method)
get_edge_map() (CptMinimumSpanningTree static method)
(CptRegionAdjacencyGraph static method)
get_include() (in module higra)
get_leaf_graph() (CptHierarchy static method)
get_lib_cmake() (in module higra)
get_lib_include() (in module higra)
get_mst() (CptBinaryHierarchy static method)
get_mst_edge_map() (CptBinaryHierarchy static method)
get_nd_regular_graph() (in module higra)
get_nd_regular_implicit_graph() (in module higra)
get_pre_graph() (CptRegionAdjacencyGraph static method)
get_shape() (CptGridGraph static method)
get_vertex_map() (CptRegionAdjacencyGraph static method)
graph_4_adjacency_2_khalimsky() (in module higra)
graph_cut() (HorizontalCutNodes method)
graph_cut_2_labelisation() (in module higra)
grid2lin() (EmbeddingGrid2d method)
H
has_method() (in module higra)
hg::accumulate_and_combine_sequential (C++ function)
hg::accumulate_at (C++ function)
hg::accumulate_graph_edges (C++ function)
hg::accumulate_graph_vertices (C++ function)
hg::accumulate_on_contours (C++ function)
hg::accumulate_parallel (C++ function)
hg::accumulate_sequential (C++ function)
hg::accumulators (C++ enum)
hg::accumulators::argmax (C++ enumerator)
hg::accumulators::argmin (C++ enumerator)
hg::accumulators::counter (C++ enumerator)
hg::accumulators::first (C++ enumerator)
hg::accumulators::last (C++ enumerator)
hg::accumulators::max (C++ enumerator)
hg::accumulators::mean (C++ enumerator)
hg::accumulators::min (C++ enumerator)
hg::accumulators::prod (C++ enumerator)
hg::accumulators::sum (C++ enumerator)
hg::add_edge (C++ function)
hg::add_edges (C++ function)
hg::add_vertex (C++ function)
hg::add_vertices (C++ function)
hg::adjacency_matrix_2_undirected_graph (C++ function)
hg::adjacent_vertex_iterator (C++ function)
hg::adjacent_vertices (C++ function)
,
[1]
,
[2]
hg::ancestors (C++ function)
hg::ancestors_iterator (C++ function)
hg::arg_sort (C++ function)
,
[1]
hg::array_1d (C++ type)
hg::array_2d (C++ type)
hg::array_3d (C++ type)
hg::array_4d (C++ type)
hg::array_nd (C++ type)
hg::assess_fragmentation_horizontal_cut (C++ function)
hg::assess_partition (C++ function)
,
[1]
hg::attribute_area (C++ function)
,
[1]
hg::attribute_child_number (C++ function)
hg::attribute_children_pair_sum_product (C++ function)
hg::attribute_contour_length_component_tree (C++ function)
hg::attribute_depth (C++ function)
hg::attribute_dynamics (C++ function)
hg::attribute_extinction_value (C++ function)
hg::attribute_extrema (C++ function)
hg::attribute_height (C++ function)
hg::attribute_sibling (C++ function)
hg::attribute_smallest_enclosing_shape (C++ function)
hg::attribute_volume (C++ function)
hg::binary_labelisation_from_markers (C++ function)
hg::binary_partition_tree (C++ function)
hg::binary_partition_tree_average_linkage (C++ function)
hg::binary_partition_tree_complete_linkage (C++ function)
hg::binary_partition_tree_exponential_linkage (C++ function)
hg::binary_partition_tree_min_linkage (C++ function)
hg::binary_partition_tree_MumfordShah_energy (C++ function)
hg::binary_partition_tree_ward_linkage (C++ function)
hg::bipartite_graph_matching (C++ function)
hg::bpt_canonical (C++ function)
hg::card_intersections (C++ function)
hg::category (C++ function)
hg::child (C++ function)
,
[1]
hg::children (C++ function)
hg::children_iterator (C++ function)
hg::component_tree_max_tree (C++ function)
hg::component_tree_min_tree (C++ function)
hg::component_tree_tree_of_shapes_image2d (C++ function)
hg::contour_2d (C++ type)
hg::contour_segment_2d (C++ type)
hg::copy_graph (C++ function)
,
[1]
,
[2]
hg::degree (C++ function)
,
[1]
,
[2]
,
[3]
hg::dendrogram_purity (C++ function)
hg::edge_from_index (C++ function)
,
[1]
hg::edge_iterator (C++ function)
hg::edges (C++ function)
,
[1]
hg::embedding_grid (C++ type)
hg::embedding_grid_1d (C++ type)
hg::embedding_grid_2d (C++ type)
hg::embedding_grid_3d (C++ type)
hg::embedding_grid_4d (C++ type)
hg::extend (C++ function)
hg::fibonacci_heap (C++ type)
hg::find_region (C++ function)
,
[1]
hg::fit_contour_2d (C++ function)
hg::get_4_adjacency_graph (C++ function)
hg::get_4_adjacency_implicit_graph (C++ function)
hg::get_8_adjacency_graph (C++ function)
hg::get_8_adjacency_implicit_graph (C++ function)
hg::get_bipartite_matching_graph_contour_image_2d (C++ function)
hg::graph_4_adjacency_2_khalimsky (C++ function)
hg::graph_cut_2_labelisation (C++ function)
hg::hash_setS (C++ type)
hg::hg::accumulator_argmax (C++ struct)
hg::hg::accumulator_argmax::get_output_shape (C++ function)
hg::hg::accumulator_argmax::make_accumulator (C++ function)
hg::hg::accumulator_argmin (C++ struct)
hg::hg::accumulator_argmin::get_output_shape (C++ function)
hg::hg::accumulator_argmin::make_accumulator (C++ function)
hg::hg::accumulator_counter (C++ struct)
hg::hg::accumulator_counter::get_output_shape (C++ function)
hg::hg::accumulator_counter::make_accumulator (C++ function)
hg::hg::accumulator_first (C++ struct)
hg::hg::accumulator_first::get_output_shape (C++ function)
hg::hg::accumulator_first::make_accumulator (C++ function)
hg::hg::accumulator_last (C++ struct)
hg::hg::accumulator_last::get_output_shape (C++ function)
hg::hg::accumulator_last::make_accumulator (C++ function)
hg::hg::accumulator_max (C++ struct)
hg::hg::accumulator_max::get_output_shape (C++ function)
hg::hg::accumulator_max::init_value (C++ function)
hg::hg::accumulator_max::make_accumulator (C++ function)
hg::hg::accumulator_max::reduce (C++ function)
hg::hg::accumulator_mean (C++ struct)
hg::hg::accumulator_mean::get_output_shape (C++ function)
hg::hg::accumulator_mean::make_accumulator (C++ function)
hg::hg::accumulator_min (C++ struct)
hg::hg::accumulator_min::get_output_shape (C++ function)
hg::hg::accumulator_min::init_value (C++ function)
hg::hg::accumulator_min::make_accumulator (C++ function)
hg::hg::accumulator_min::reduce (C++ function)
hg::hg::accumulator_prod (C++ struct)
hg::hg::accumulator_prod::get_output_shape (C++ function)
hg::hg::accumulator_prod::init_value (C++ function)
hg::hg::accumulator_prod::make_accumulator (C++ function)
hg::hg::accumulator_prod::reduce (C++ function)
hg::hg::accumulator_sum (C++ struct)
hg::hg::accumulator_sum::get_output_shape (C++ function)
hg::hg::accumulator_sum::init_value (C++ function)
hg::hg::accumulator_sum::make_accumulator (C++ function)
hg::hg::accumulator_sum::reduce (C++ function)
hg::hg::assesser_fragmentation_optimal_cut (C++ class)
hg::hg::assesser_fragmentation_optimal_cut::assesser_fragmentation_optimal_cut (C++ function)
hg::hg::assesser_fragmentation_optimal_cut::fragmentation_curve (C++ function)
hg::hg::assesser_fragmentation_optimal_cut::optimal_number_of_regions (C++ function)
hg::hg::assesser_fragmentation_optimal_cut::optimal_partition (C++ function)
hg::hg::assesser_fragmentation_optimal_cut::optimal_score (C++ function)
hg::hg::assesser_fragmentation_optimal_cut::straightened_altitudes (C++ function)
hg::hg::COMPILE_ERROR (C++ struct)
hg::hg::counting_iterator (C++ struct)
hg::hg::counting_iterator::advance (C++ function)
hg::hg::counting_iterator::counting_iterator (C++ function)
,
[1]
hg::hg::counting_iterator::decrement (C++ function)
hg::hg::counting_iterator::dereference (C++ function)
hg::hg::counting_iterator::distance_to (C++ function)
hg::hg::counting_iterator::equal (C++ function)
hg::hg::counting_iterator::increment (C++ function)
hg::hg::counting_iterator::self_type (C++ type)
hg::hg::forward_iterator_facade (C++ struct)
hg::hg::forward_iterator_facade::difference_type (C++ type)
hg::hg::forward_iterator_facade::iterator_category (C++ type)
hg::hg::forward_iterator_facade::operator!= (C++ function)
hg::hg::forward_iterator_facade::operator* (C++ function)
hg::hg::forward_iterator_facade::operator++ (C++ function)
,
[1]
hg::hg::forward_iterator_facade::operator== (C++ function)
hg::hg::forward_iterator_facade::pointer (C++ type)
hg::hg::forward_iterator_facade::reference (C++ type)
hg::hg::forward_iterator_facade::self_type (C++ type)
hg::hg::forward_iterator_facade::value_type (C++ type)
hg::hg::fragmentation_curve (C++ struct)
hg::hg::fragmentation_curve::fragmentation_curve (C++ function)
hg::hg::fragmentation_curve::num_regions (C++ function)
hg::hg::fragmentation_curve::num_regions_ground_truth (C++ function)
hg::hg::fragmentation_curve::num_regions_normalized (C++ function)
hg::hg::fragmentation_curve::optimal_number_of_regions (C++ function)
hg::hg::fragmentation_curve::optimal_score (C++ function)
hg::hg::fragmentation_curve::scores (C++ function)
hg::hg::hierarchy_aligner (C++ class)
hg::hg::hierarchy_aligner::align_hierarchy (C++ function)
,
[1]
,
[2]
hg::hg::hierarchy_aligner::hierarchy_aligner (C++ function)
hg::hg::horizontal_cut_explorer (C++ class)
hg::hg::horizontal_cut_explorer::altitude_cut (C++ function)
hg::hg::horizontal_cut_explorer::altitude_cuts (C++ function)
hg::hg::horizontal_cut_explorer::horizontal_cut_explorer (C++ function)
hg::hg::horizontal_cut_explorer::horizontal_cut_from_altitude (C++ function)
hg::hg::horizontal_cut_explorer::horizontal_cut_from_index (C++ function)
hg::hg::horizontal_cut_explorer::horizontal_cut_from_num_regions (C++ function)
hg::hg::horizontal_cut_explorer::num_cuts (C++ function)
hg::hg::horizontal_cut_explorer::num_regions_cut (C++ function)
hg::hg::horizontal_cut_explorer::num_regions_cuts (C++ function)
hg::hg::horizontal_cut_explorer::tree_type (C++ type)
hg::hg::horizontal_cut_explorer::value_type (C++ type)
hg::hg::horizontal_cut_nodes (C++ struct)
hg::hg::horizontal_cut_nodes::altitude (C++ member)
hg::hg::horizontal_cut_nodes::graph_cut (C++ function)
hg::hg::horizontal_cut_nodes::horizontal_cut_nodes (C++ function)
hg::hg::horizontal_cut_nodes::labelisation_leaves (C++ function)
hg::hg::horizontal_cut_nodes::nodes (C++ member)
hg::hg::horizontal_cut_nodes::reconstruct_leaf_data (C++ function)
hg::hg::indexed_edge (C++ class)
hg::hg::indexed_edge::[anonymous] (C++ member)
,
[1]
hg::hg::indexed_edge::first (C++ member)
hg::hg::indexed_edge::index (C++ member)
hg::hg::indexed_edge::indexed_edge (C++ function)
,
[1]
hg::hg::indexed_edge::operator edge_index_t (C++ function)
hg::hg::indexed_edge::operator std::pair<vertex_descriptor, vertex_descriptor> (C++ function)
hg::hg::indexed_edge::second (C++ member)
hg::hg::indexed_edge::source (C++ member)
hg::hg::indexed_edge::target (C++ member)
hg::hg::irange (C++ struct)
hg::hg::irange::begin (C++ function)
hg::hg::irange::end (C++ function)
hg::hg::irange::irange (C++ function)
,
[1]
hg::hg::iterator_wrapper (C++ struct)
hg::hg::iterator_wrapper::begin (C++ function)
,
[1]
hg::hg::iterator_wrapper::end (C++ function)
,
[1]
hg::hg::iterator_wrapper::first (C++ member)
hg::hg::iterator_wrapper::iterator_wrapper (C++ function)
,
[1]
hg::hg::iterator_wrapper::last (C++ member)
hg::hg::logger (C++ struct)
hg::hg::logger::callback_list (C++ type)
hg::hg::logger::callbacks (C++ function)
hg::hg::logger::emit (C++ function)
hg::hg::logger::MAX_MSG_SIZE (C++ member)
hg::hg::logger::trace_enabled (C++ function)
hg::hg::minimum_spanning_tree_result (C++ struct)
hg::hg::minimum_spanning_tree_result::mst (C++ member)
hg::hg::minimum_spanning_tree_result::mst_edge_map (C++ member)
hg::hg::node_weighted_tree (C++ struct)
hg::hg::node_weighted_tree::altitudes (C++ member)
hg::hg::node_weighted_tree::tree (C++ member)
hg::hg::node_weighted_tree_and_mst (C++ struct)
hg::hg::node_weighted_tree_and_mst::altitudes (C++ member)
hg::hg::node_weighted_tree_and_mst::mst_edge_map (C++ member)
hg::hg::node_weighted_tree_and_mst::tree (C++ member)
hg::hg::pink_graph (C++ struct)
hg::hg::pink_graph::edge_weights (C++ member)
hg::hg::pink_graph::graph (C++ member)
hg::hg::pink_graph::shape (C++ member)
hg::hg::pink_graph::vertex_weights (C++ member)
hg::hg::random_iterator_facade (C++ struct)
hg::hg::random_iterator_facade::difference_type (C++ type)
hg::hg::random_iterator_facade::iterator_category (C++ type)
hg::hg::random_iterator_facade::operator!= (C++ function)
hg::hg::random_iterator_facade::operator* (C++ function)
hg::hg::random_iterator_facade::operator+ (C++ function)
,
[1]
hg::hg::random_iterator_facade::operator++ (C++ function)
,
[1]
hg::hg::random_iterator_facade::operator- (C++ function)
hg::hg::random_iterator_facade::operator-- (C++ function)
,
[1]
hg::hg::random_iterator_facade::operator< (C++ function)
hg::hg::random_iterator_facade::operator<= (C++ function)
hg::hg::random_iterator_facade::operator== (C++ function)
hg::hg::random_iterator_facade::operator> (C++ function)
hg::hg::random_iterator_facade::operator>= (C++ function)
hg::hg::random_iterator_facade::operator[] (C++ function)
hg::hg::random_iterator_facade::pointer (C++ type)
hg::hg::random_iterator_facade::reference (C++ type)
hg::hg::random_iterator_facade::self_type (C++ type)
hg::hg::random_iterator_facade::value_type (C++ type)
hg::hg::region_adjacency_graph (C++ struct)
hg::hg::region_adjacency_graph::edge_map (C++ member)
hg::hg::region_adjacency_graph::rag (C++ member)
hg::hg::region_adjacency_graph::vertex_map (C++ member)
hg::hg::remapped_tree (C++ struct)
hg::hg::remapped_tree::node_map (C++ member)
hg::hg::remapped_tree::tree (C++ member)
hg::hg::scorer_partition_BCE (C++ struct)
hg::hg::scorer_partition_BCE::score (C++ function)
hg::hg::scorer_partition_DCovering (C++ struct)
hg::hg::scorer_partition_DCovering::score (C++ function)
hg::hg::scorer_partition_DHamming (C++ struct)
hg::hg::scorer_partition_DHamming::score (C++ function)
hg::hg::supervertex_hierarchy (C++ struct)
hg::hg::supervertex_hierarchy::node_map (C++ member)
hg::hg::supervertex_hierarchy::supervertex_labelisation (C++ member)
hg::hg::supervertex_hierarchy::tree (C++ member)
hg::hg::transform_forward_iterator (C++ struct)
hg::hg::transform_forward_iterator::dereference (C++ function)
hg::hg::transform_forward_iterator::equal (C++ function)
hg::hg::transform_forward_iterator::increment (C++ function)
hg::hg::transform_forward_iterator::self_type (C++ type)
hg::hg::transform_forward_iterator::transform_forward_iterator (C++ function)
,
[1]
,
[2]
hg::hierarchy_to_optimal_energy_cut_hierarchy (C++ function)
hg::in_degree (C++ function)
,
[1]
,
[2]
,
[3]
hg::in_edge_iterator (C++ function)
hg::in_edges (C++ function)
,
[1]
,
[2]
hg::index (C++ function)
hg::index_t (C++ type)
hg::invalid_index (C++ member)
hg::is_bipartite_graph (C++ function)
,
[1]
hg::is_leaf (C++ function)
,
[1]
hg::khalimsky_2_graph_4_adjacency (C++ function)
,
[1]
hg::labelisation_2_graph_cut (C++ function)
hg::labelisation_hierarchy_supervertices (C++ function)
hg::labelisation_horizontal_cut_from_threshold (C++ function)
hg::labelisation_optimal_cut_from_energy (C++ function)
hg::labelisation_seeded_watershed (C++ function)
hg::labelisation_watershed (C++ function)
hg::lca_fast (C++ type)
hg::lca_sparse_table (C++ type)
hg::lca_sparse_table_block (C++ type)
hg::leaves_it (C++ enum)
hg::leaves_it::exclude (C++ enumerator)
hg::leaves_it::include (C++ enumerator)
hg::leaves_iterator (C++ function)
hg::leaves_to_root_iterator (C++ function)
hg::line_graph (C++ function)
,
[1]
hg::lowest_common_ancestor (C++ function)
,
[1]
hg::make_hierarchy_aligner_from_graph_cut (C++ function)
hg::make_hierarchy_aligner_from_hierarchy (C++ function)
hg::make_hierarchy_aligner_from_labelisation (C++ function)
hg::make_horizontal_cut_explorer (C++ function)
hg::make_horizontal_cut_nodes (C++ function)
hg::make_light_axis_view (C++ function)
hg::make_node_weighted_tree (C++ function)
hg::make_node_weighted_tree_and_mst (C++ function)
hg::make_region_adjacency_graph_from_graph_cut (C++ function)
hg::make_region_adjacency_graph_from_labelisation (C++ function)
hg::make_remapped_tree (C++ function)
hg::mean_pb_hierarchy (C++ function)
hg::minimum_spanning_tree (C++ function)
hg::num_children (C++ function)
,
[1]
hg::num_edges (C++ function)
,
[1]
hg::num_leaves (C++ function)
hg::num_vertices (C++ function)
,
[1]
,
[2]
hg::optimal_cut_measure (C++ enum)
hg::optimal_cut_measure::BCE (C++ enumerator)
hg::optimal_cut_measure::DCovering (C++ enumerator)
hg::optimal_cut_measure::DHamming (C++ enumerator)
hg::oriented_watershed (C++ function)
hg::other_vertex (C++ function)
hg::out_degree (C++ function)
,
[1]
,
[2]
,
[3]
hg::out_edge_iterator (C++ function)
hg::out_edges (C++ function)
,
[1]
,
[2]
hg::parent (C++ function)
,
[1]
hg::parents (C++ function)
hg::parfor (C++ function)
hg::partition_measure (C++ enum)
hg::partition_measure::BCE (C++ enumerator)
hg::partition_measure::DCovering (C++ enumerator)
hg::partition_measure::DHamming (C++ enumerator)
hg::point (C++ type)
hg::point_1d_f (C++ type)
hg::point_1d_i (C++ type)
hg::point_2d_f (C++ type)
hg::point_2d_i (C++ type)
hg::point_3d_f (C++ type)
hg::point_3d_i (C++ type)
hg::point_4d_f (C++ type)
hg::point_4d_i (C++ type)
hg::polyline_contour_2d (C++ type)
hg::project_fine_to_coarse_labelisation (C++ function)
hg::project_fine_to_coarse_rag (C++ function)
hg::propagate_parallel (C++ function)
,
[1]
hg::propagate_sequential (C++ function)
hg::propagate_sequential_and_accumulate (C++ function)
,
[1]
hg::quasi_flat_zone_hierarchy (C++ function)
hg::rag_2d_vertex_perimeter_and_edge_length (C++ function)
,
[1]
hg::rag_accumulate (C++ function)
hg::rag_back_project_weights (C++ function)
hg::read_image_pnm (C++ function)
hg::read_pink_graph (C++ function)
,
[1]
hg::read_tree (C++ function)
hg::reconstruct_leaf_data (C++ function)
hg::regular_graph (C++ type)
hg::regular_graph_adjacent_vertex_iterator (C++ type)
hg::regular_graph_out_edge_iterator (C++ type)
hg::regular_grid_graph_1d (C++ type)
hg::regular_grid_graph_2d (C++ type)
hg::regular_grid_graph_3d (C++ type)
hg::regular_grid_graph_4d (C++ type)
hg::remove_edge (C++ function)
hg::root (C++ function)
hg::root_it (C++ enum)
hg::root_it::exclude (C++ enumerator)
hg::root_it::include (C++ enumerator)
hg::root_to_leaves_iterator (C++ function)
hg::saliency_map (C++ function)
hg::save_image_pnm (C++ function)
hg::save_pink_graph (C++ function)
,
[1]
hg::save_tree (C++ function)
hg::set_edge (C++ function)
hg::simplify_tree (C++ function)
hg::size_t (C++ type)
hg::sort (C++ function)
,
[1]
,
[2]
,
[3]
hg::sort_hierarchy_with_altitudes (C++ function)
hg::source (C++ function)
,
[1]
hg::sources (C++ function)
hg::stable_arg_sort (C++ function)
,
[1]
hg::stable_sort (C++ function)
,
[1]
,
[2]
,
[3]
hg::stackv (C++ type)
hg::sub_tree (C++ function)
hg::subgraph_spanning (C++ function)
hg::supervertices_hierarchy (C++ function)
hg::target (C++ function)
,
[1]
hg::targets (C++ function)
hg::test_tree_isomorphism (C++ function)
hg::tos_padding (C++ enum)
hg::tos_padding::mean (C++ enumerator)
,
[1]
,
[2]
hg::tos_padding::none (C++ enumerator)
hg::tos_padding::zero (C++ enumerator)
hg::tree (C++ type)
hg::tree_2_binary_tree (C++ function)
hg::tree_category (C++ enum)
hg::tree_category::component_tree (C++ enumerator)
hg::tree_category::partition_tree (C++ enumerator)
hg::tree_fusion_depth_map (C++ function)
,
[1]
hg::tree_monotonic_regression (C++ function)
,
[1]
hg::ugraph (C++ type)
hg::undirected_graph (C++ type)
hg::undirected_graph_2_adjacency_matrix (C++ function)
hg::union_find (C++ type)
hg::unreachable (C++ function)
hg::vecS (C++ type)
hg::vertex_iterator (C++ function)
hg::vertices (C++ function)
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[1]
,
[2]
hg::watershed_hierarchy_by_area (C++ function)
,
[1]
hg::watershed_hierarchy_by_attribute (C++ function)
hg::watershed_hierarchy_by_dynamics (C++ function)
hg::watershed_hierarchy_by_minima_ordering (C++ function)
hg::watershed_hierarchy_by_volume (C++ function)
,
[1]
hg::weight_functions (C++ enum)
hg::weight_functions::L0 (C++ enumerator)
hg::weight_functions::L1 (C++ enumerator)
hg::weight_functions::L2 (C++ enumerator)
hg::weight_functions::L2_squared (C++ enumerator)
hg::weight_functions::L_infinity (C++ enumerator)
hg::weight_functions::max (C++ enumerator)
hg::weight_functions::mean (C++ enumerator)
hg::weight_functions::min (C++ enumerator)
hg::weight_functions::source (C++ enumerator)
hg::weight_functions::target (C++ enumerator)
hg::weight_graph (C++ function)
,
[1]
hierarchy_to_optimal_energy_cut_hierarchy() (in module higra)
hierarchy_to_optimal_MumfordShah_energy_cut_hierarchy() (in module higra)
horizontal_cut_from_altitude() (HorizontalCutExplorer method)
horizontal_cut_from_index() (HorizontalCutExplorer method)
horizontal_cut_from_num_regions() (HorizontalCutExplorer method)
HorizontalCutExplorer (class in higra)
HorizontalCutNodes (class in higra)
I
in_degree() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
in_edges() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
index() (Tree method)
(UndirectedGraph method)
is_bipartite_graph() (in module higra)
is_in_bijection() (in module higra)
is_iterable() (in module higra)
is_leaf() (Tree method)
K
khalimsky_2_graph_4_adjacency() (in module higra)
L
L0 (WeightFunction attribute)
L1 (WeightFunction attribute)
L2 (WeightFunction attribute)
L2_squared (WeightFunction attribute)
L_infinity (WeightFunction attribute)
labelisation_2_graph_cut() (in module higra)
labelisation_hierarchy_supervertices() (in module higra)
labelisation_horizontal_cut_from_num_regions() (in module higra)
labelisation_horizontal_cut_from_threshold() (in module higra)
labelisation_leaves() (HorizontalCutNodes method)
labelisation_optimal_cut_from_energy() (in module higra)
labelisation_seeded_watershed() (in module higra)
labelisation_watershed() (in module higra)
last (Accumulators attribute)
LCAFast (in module higra)
leaves() (Tree method)
leaves_to_root_iterator() (Tree method)
lin2grid() (EmbeddingGrid2d method)
line_graph() (in module higra)
linearize_vertex_weights() (in module higra)
list_attributes() (in module higra)
lowest_common_ancestor() (Tree method)
lowest_common_ancestor_preprocess() (Tree method)
M
make_assesser_fragmentation_optimal_cut() (in module higra)
make_graph_from_points() (in module higra)
make_lca_fast() (in module higra)
make_region_adjacency_graph_from_graph_cut() (in module higra)
make_region_adjacency_graph_from_labelisation() (in module higra)
mask_2_neighbours() (in module higra)
match_pixels_image_2d() (in module higra)
max (Accumulators attribute)
(WeightFunction attribute)
mean (Accumulators attribute)
(WeightFunction attribute)
mean_angle_mod_pi() (in module higra)
mean_pb_hierarchy() (in module higra)
min (Accumulators attribute)
(WeightFunction attribute)
minimum_spanning_tree() (in module higra)
multiscale_mean_pb_hierarchy() (in module higra)
N
name() (Accumulators property)
(OptimalCutMeasure property)
(PartitionMeasure property)
(TreeCategory property)
(WeightFunction property)
neighbour_list() (RegularGraph2d method)
nodes() (HorizontalCutNodes method)
norm() (ContourSegment2d method)
normalize_shape() (in module higra)
num_children() (Tree method)
num_cuts() (HorizontalCutExplorer method)
num_edges() (Tree method)
(UndirectedGraph method)
num_leaves() (Tree method)
num_regions() (FragmentationCurve method)
num_regions_cut() (HorizontalCutExplorer method)
num_regions_cuts() (HorizontalCutExplorer method)
num_regions_ground_truth() (FragmentationCurve method)
num_regions_normalized() (FragmentationCurve method)
num_vertices() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
O
optimal_number_of_regions() (AssesserFragmentationOptimalCut method)
optimal_partition() (AssesserFragmentationOptimalCut method)
optimal_score() (AssesserFragmentationOptimalCut method)
OptimalCutMeasure (class in higra)
oriented_watershed() (in module higra)
out_degree() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
out_edges() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
P
parent() (Tree method)
parents() (Tree method)
PartitionMeasure (class in higra)
PartitionTree (TreeCategory attribute)
plot_graph() (in module higra)
plot_partition_tree() (in module higra)
PolylineContour2d (class in higra)
print_partition_tree() (in module higra)
prod (Accumulators attribute)
project_fine_to_coarse_labelisation() (in module higra)
project_fine_to_coarse_rag() (in module higra)
propagate_parallel() (in module higra)
propagate_sequential() (in module higra)
propagate_sequential_and_accumulate() (in module higra)
Q
quasi_flat_zone_hierarchy() (in module higra)
R
rag_accumulate_on_edges() (in module higra)
rag_accumulate_on_vertices() (in module higra)
rag_back_project_edge_weights() (in module higra)
rag_back_project_vertex_weights() (in module higra)
random_binary_partition_tree() (in module higra)
read_graph_pink() (in module higra)
read_tree() (in module higra)
reconstruct_leaf_data() (HorizontalCutNodes method)
(in module higra)
RegularGraph2d (class in higra)
remove_edge() (UndirectedGraph method)
root() (Tree method)
root_to_leaves_iterator() (Tree method)
S
saliency() (in module higra)
save_graph_pink() (in module higra)
save_tree() (in module higra)
scipy_linkage_matrix_to_binary_hierarchy() (in module higra)
scores() (FragmentationCurve method)
set_attribute() (in module higra)
set_auto_cache_state() (in module higra)
set_edge() (UndirectedGraph method)
set_num_threads() (in module higra)
shape() (EmbeddingGrid2d method)
(RegularGraph2d method)
simplify_tree() (in module higra)
size() (EmbeddingGrid2d method)
sort() (in module higra)
sort_hierarchy_with_altitudes() (in module higra)
source (WeightFunction attribute)
source() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
sources() (Tree method)
(UndirectedGraph method)
sub_tree() (Tree method)
subdivide() (Contour2d method)
(PolylineContour2d method)
subgraph() (in module higra)
sum (Accumulators attribute)
T
target (WeightFunction attribute)
target() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
targets() (Tree method)
(UndirectedGraph method)
test_altitudes_increasingness() (in module higra)
test_tree_isomorphism() (in module higra)
to_undirected_graph() (Tree method)
Tree (class in higra)
tree_2_binary_tree() (in module higra)
tree_fusion_depth_map() (in module higra)
tree_monotonic_regression() (in module higra)
tree_sampling_divergence() (in module higra)
TreeCategory (class in higra)
U
ultrametric_open() (in module higra)
undirected_graph_2_adjacency_matrix() (in module higra)
UndirectedGraph (class in higra)
V
validate() (Concept class method)
value() (Accumulators property)
(OptimalCutMeasure property)
(PartitionMeasure property)
(TreeCategory property)
(WeightFunction property)
vertices() (RegularGraph2d method)
(Tree method)
(UndirectedGraph method)
W
watershed_hierarchy_by_area() (in module higra)
watershed_hierarchy_by_attribute() (in module higra)
watershed_hierarchy_by_dynamics() (in module higra)
watershed_hierarchy_by_minima_ordering() (in module higra)
watershed_hierarchy_by_number_of_parents() (in module higra)
watershed_hierarchy_by_volume() (in module higra)
weight_graph() (in module higra)
WeightFunction (class in higra)
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