Informations
Fundamentals
Python API
bpt_canonical()
canonize_hierarchy()
quasi_flat_zone_hierarchy()
simplify_tree()
tree_2_binary_tree()
saliency()
binary_partition_tree_single_linkage()
binary_partition_tree_complete_linkage()
binary_partition_tree_average_linkage()
binary_partition_tree_exponential_linkage()
binary_partition_tree_ward_linkage()
binary_partition_tree_MumfordShah_energy()
binary_partition_tree()
component_tree_min_tree()
component_tree_max_tree()
constrained_connectivity_hierarchy_alpha_omega()
constrained_connectivity_hierarchy_strong_connection()
random_binary_partition_tree()
watershed_hierarchy_by_attribute()
watershed_hierarchy_by_minima_ordering()
watershed_hierarchy_by_area()
watershed_hierarchy_by_volume()
watershed_hierarchy_by_dynamics()
watershed_hierarchy_by_number_of_parents()
align_hierarchies()
project_fine_to_coarse_rag()
project_fine_to_coarse_labelisation()
labelisation_horizontal_cut_from_num_regions()
labelisation_horizontal_cut_from_threshold()
HorizontalCutExplorer
HorizontalCutExplorer.__init__()
HorizontalCutExplorer.__new__()
HorizontalCutExplorer.altitude_cut()
HorizontalCutExplorer.altitude_cuts()
HorizontalCutExplorer.horizontal_cut_from_altitude()
HorizontalCutExplorer.horizontal_cut_from_index()
HorizontalCutExplorer.horizontal_cut_from_num_regions()
HorizontalCutExplorer.num_cuts()
HorizontalCutExplorer.num_regions_cut()
HorizontalCutExplorer.num_regions_cuts()
HorizontalCutNodes
HorizontalCutNodes.__init__()
HorizontalCutNodes.altitude()
HorizontalCutNodes.graph_cut()
HorizontalCutNodes.labelisation_leaves()
HorizontalCutNodes.nodes()
HorizontalCutNodes.reconstruct_leaf_data()
propagate_parallel()
propagate_sequential()
propagate_sequential_and_accumulate()
accumulate_parallel()
accumulate_sequential()
accumulate_and_add_sequential()
accumulate_and_multiply_sequential()
accumulate_and_max_sequential()
accumulate_and_min_sequential()
accumulate_on_contours()
binary_labelisation_from_markers()
filter_non_relevant_node_from_tree()
filter_small_nodes_from_tree()
filter_weak_frontier_nodes_from_tree()
labelisation_hierarchy_supervertices()
reconstruct_leaf_data()
sort_hierarchy_with_altitudes()
test_altitudes_increasingness()
test_tree_isomorphism()
tree_fusion_depth_map()
tree_monotonic_regression()
attribute_area()
attribute_child_number()
attribute_contour_length()
attribute_contour_strength()
attribute_compactness()
attribute_depth()
attribute_dynamics()
attribute_extinction_value()
attribute_extrema()
attribute_frontier_length()
attribute_frontier_strength()
attribute_gaussian_region_weights_model()
attribute_height()
attribute_lca_map()
attribute_mean_vertex_weights()
attribute_moment_of_inertia()
attribute_children_pair_sum_product()
attribute_piecewise_constant_Mumford_Shah_energy()
attribute_regular_altitudes()
attribute_sibling()
attribute_topological_height()
attribute_tree_sampling_probability()
attribute_volume()
labelisation_optimal_cut_from_energy()
hierarchy_to_optimal_energy_cut_hierarchy()
hierarchy_to_optimal_MumfordShah_energy_cut_hierarchy()
dasgupta_cost()
dendrogram_purity()
tree_sampling_divergence()
FragmentationCurve
FragmentationCurve.__init__()
FragmentationCurve.num_regions()
FragmentationCurve.num_regions_ground_truth()
FragmentationCurve.num_regions_normalized()
FragmentationCurve.scores()
OptimalCutMeasure
OptimalCutMeasure.BCE
OptimalCutMeasure.DCovering
OptimalCutMeasure.DHamming
OptimalCutMeasure.__annotations__
OptimalCutMeasure.__eq__()
OptimalCutMeasure.__getstate__()
OptimalCutMeasure.__hash__()
OptimalCutMeasure.__index__()
OptimalCutMeasure.__init__()
OptimalCutMeasure.__int__()
OptimalCutMeasure.__members__
OptimalCutMeasure.__module__
OptimalCutMeasure.__ne__()
OptimalCutMeasure.__repr__()
OptimalCutMeasure.__setstate__()
OptimalCutMeasure.__str__()
OptimalCutMeasure.name
OptimalCutMeasure.value
assess_fragmentation_horizontal_cut()
assess_fragmentation_optimal_cut()
make_assesser_fragmentation_optimal_cut()
AssesserFragmentationOptimalCut
AssesserFragmentationOptimalCut.fragmentation_curve()
AssesserFragmentationOptimalCut.optimal_number_of_regions()
AssesserFragmentationOptimalCut.optimal_partition()
AssesserFragmentationOptimalCut.optimal_score()
PartitionMeasure
PartitionMeasure.BCE
PartitionMeasure.DCovering
PartitionMeasure.DHamming
PartitionMeasure.name
PartitionMeasure.value
assess_partition()
bipartite_graph_matching()
is_bipartite_graph()
accumulate_graph_edges()
accumulate_graph_vertices()
attribute_edge_length()
attribute_vertex_area()
attribute_vertex_coordinates()
attribute_vertex_list()
attribute_vertex_perimeter()
adjacency_matrix_2_undirected_graph()
graph_cut_2_labelisation()
labelisation_2_graph_cut()
line_graph()
make_graph_from_points()
minimum_spanning_tree()
subgraph()
undirected_graph_2_adjacency_matrix()
ultrametric_open()
WeightFunction
WeightFunction.L0
WeightFunction.L1
WeightFunction.L2
WeightFunction.L2_squared
WeightFunction.L_infinity
WeightFunction.max
WeightFunction.mean
WeightFunction.min
WeightFunction.name
WeightFunction.source
WeightFunction.target
WeightFunction.value
weight_graph()
make_region_adjacency_graph_from_labelisation()
make_region_adjacency_graph_from_graph_cut()
rag_back_project_vertex_weights()
rag_back_project_edge_weights()
rag_accumulate_on_vertices()
rag_accumulate_on_edges()
labelisation_watershed()
labelisation_seeded_watershed()
Accumulators
Accumulators.argmax
Accumulators.argmin
Accumulators.counter
Accumulators.first
Accumulators.last
Accumulators.max
Accumulators.mean
Accumulators.min
Accumulators.name
Accumulators.prod
Accumulators.sum
Accumulators.value
accumulate_at()
Concept
Concept.construct()
Concept.description()
Concept.validate()
CptGridGraph
CptGridGraph.get_shape()
CptRegionAdjacencyGraph
CptRegionAdjacencyGraph.get_edge_map()
CptRegionAdjacencyGraph.get_pre_graph()
CptRegionAdjacencyGraph.get_vertex_map()
CptHierarchy
CptHierarchy.get_leaf_graph()
CptBinaryHierarchy
CptBinaryHierarchy.get_mst()
CptBinaryHierarchy.get_mst_edge_map()
CptMinimumSpanningTree
CptMinimumSpanningTree.get_base_graph()
CptMinimumSpanningTree.get_edge_map()
EmbeddingGrid2d
EmbeddingGrid2d.__init__()
EmbeddingGrid2d.__reduce__()
EmbeddingGrid2d.contains()
EmbeddingGrid2d.dimension()
EmbeddingGrid2d.grid2lin()
EmbeddingGrid2d.lin2grid()
EmbeddingGrid2d.shape()
EmbeddingGrid2d.size()
make_lca_fast()
LCAFast
RegularGraph2d
RegularGraph2d.__init__()
RegularGraph2d.__new__()
RegularGraph2d.__reduce__()
RegularGraph2d.adjacent_vertices()
RegularGraph2d.as_explicit_graph()
RegularGraph2d.degree()
RegularGraph2d.in_degree()
RegularGraph2d.in_edges()
RegularGraph2d.neighbour_list()
RegularGraph2d.num_vertices()
RegularGraph2d.out_degree()
RegularGraph2d.out_edges()
RegularGraph2d.shape()
RegularGraph2d.source()
RegularGraph2d.target()
RegularGraph2d.vertices()
TreeCategory
TreeCategory.ComponentTree
TreeCategory.PartitionTree
TreeCategory.name
TreeCategory.value
Tree
Tree.__init__()
Tree.__reduce__()
Tree.adjacent_vertices()
Tree.ancestors()
Tree.category()
Tree.child()
Tree.children()
Tree.clear_children()
Tree.degree()
Tree.edge_from_index()
Tree.edge_list()
Tree.edges()
Tree.find_region()
Tree.in_degree()
Tree.in_edges()
Tree.index()
Tree.is_leaf()
Tree.leaves()
Tree.leaves_to_root_iterator()
Tree.lowest_common_ancestor()
Tree.lowest_common_ancestor_preprocess()
Tree.num_children()
Tree.num_edges()
Tree.num_leaves()
Tree.num_vertices()
Tree.out_degree()
Tree.out_edges()
Tree.parent()
Tree.parents()
Tree.root()
Tree.root_to_leaves_iterator()
Tree.source()
Tree.sources()
Tree.sub_tree()
Tree.target()
Tree.targets()
Tree.to_undirected_graph()
Tree.vertices()
UndirectedGraph
UndirectedGraph.__init__()
UndirectedGraph.__reduce__()
UndirectedGraph.add_edge()
UndirectedGraph.add_edges()
UndirectedGraph.add_vertex()
UndirectedGraph.add_vertices()
UndirectedGraph.adjacent_vertices()
UndirectedGraph.degree()
UndirectedGraph.edge_from_index()
UndirectedGraph.edge_list()
UndirectedGraph.edges()
UndirectedGraph.in_degree()
UndirectedGraph.in_edges()
UndirectedGraph.index()
UndirectedGraph.num_edges()
UndirectedGraph.num_vertices()
UndirectedGraph.out_degree()
UndirectedGraph.out_edges()
UndirectedGraph.remove_edge()
UndirectedGraph.set_edge()
UndirectedGraph.source()
UndirectedGraph.sources()
UndirectedGraph.target()
UndirectedGraph.targets()
UndirectedGraph.vertices()
binary_hierarchy_to_scipy_linkage_matrix()
scipy_linkage_matrix_to_binary_hierarchy()
fit_contour_2d()
Contour2d
Contour2d.__getitem__()
Contour2d.__init__()
Contour2d.__iter__()
Contour2d.__len__()
Contour2d.subdivide()
PolylineContour2d
PolylineContour2d.__getitem__()
PolylineContour2d.__init__()
PolylineContour2d.__iter__()
PolylineContour2d.__len__()
PolylineContour2d.subdivide()
ContourSegment2d
ContourSegment2d.__getitem__()
ContourSegment2d.__init__()
ContourSegment2d.__iter__()
ContourSegment2d.__len__()
ContourSegment2d.angle()
ContourSegment2d.distance_to_point()
ContourSegment2d.norm()
graph_4_adjacency_2_khalimsky()
khalimsky_2_graph_4_adjacency()
get_4_adjacency_graph()
get_6_adjacency_graph()
get_8_adjacency_graph()
get_4_adjacency_implicit_graph()
get_6_adjacency_implicit_graph()
get_8_adjacency_implicit_graph()
get_nd_regular_graph()
get_nd_regular_implicit_graph()
mask_2_neighbours()
match_pixels_image_2d()
oriented_watershed()
mean_pb_hierarchy()
multiscale_mean_pb_hierarchy()
component_tree_tree_of_shapes_image()
component_tree_tree_of_shapes_image2d()
component_tree_tree_of_shapes_image3d()
component_tree_multivariate_tree_of_shapes_image2d()
read_graph_pink()
save_graph_pink()
print_partition_tree()
read_tree()
save_tree()
plot_graph()
plot_partition_tree()
list_attributes()
get_attribute()
set_attribute()
auto_cache()
set_auto_cache_state()
get_auto_cache_state()
clear_auto_cache()
arg_sort()
sort()
set_num_threads()
is_iterable()
extend_class()
normalize_shape()
linearize_vertex_weights()
delinearize_vertex_weights()
has_method()
is_in_bijection()
mean_angle_mod_pi()
dtype_info()
common_type()
cast_to_common_type()
cast_to_dtype()
get_include()
get_lib_include()
get_lib_cmake()
c++ API
accumulators
first
last
mean
min
max
counter
sum
prod
argmin
argmax
weight_functions
L0
L1
L2
L_infinity
L2_squared
source
target
optimal_cut_measure
BCE
DHamming
DCovering
partition_measure
tos_padding
none
zero
tree_category
component_tree
partition_tree
leaves_it
include
exclude
root_it
contour_2d
polyline_contour_2d
contour_segment_2d
array_1d
array_2d
array_3d
array_4d
array_nd
embedding_grid
embedding_grid_1d
embedding_grid_2d
embedding_grid_3d
embedding_grid_4d
fibonacci_heap
lca_sparse_table_block
lca_sparse_table
lca_fast
point
point_1d_f
point_1d_i
point_2d_f
point_2d_i
point_3d_f
point_3d_i
point_4d_f
point_4d_i
regular_graph
regular_grid_graph_1d
regular_grid_graph_2d
regular_grid_graph_3d
regular_grid_graph_4d
regular_graph_out_edge_iterator
regular_graph_adjacent_vertex_iterator
tree
vecS
hash_setS
undirected_graph
ugraph
union_find
index_t
size_t
stackv
invalid_index
accumulate_and_combine_sequential()
make_hierarchy_aligner_from_graph_cut()
make_hierarchy_aligner_from_labelisation()
make_hierarchy_aligner_from_hierarchy()
subgraph_spanning()
make_horizontal_cut_nodes()
make_horizontal_cut_explorer()
rag_back_project_weights()
rag_accumulate()
supervertices_hierarchy()
sub_tree()
make_incremental_watershed_cut()
card_intersections()
attribute_contour_length_component_tree()
attribute_smallest_enclosing_shape()
source()
sources()
target()
targets()
vertex_iterator()
edge_iterator()
out_edge_iterator()
in_edge_iterator()
adjacent_vertex_iterator()
children_iterator()
ancestors_iterator()
degree()
in_degree()
out_degree()
add_edges()
copy_graph()
other_vertex()
binary_partition_tree_min_linkage()
make_node_weighted_tree()
make_remapped_tree()
make_node_weighted_tree_and_mst()
saliency_map()
rag_2d_vertex_perimeter_and_edge_length()
get_bipartite_matching_graph_contour_image_2d()
read_pink_graph()
save_pink_graph()
read_image_pnm()
save_image_pnm()
stable_sort()
stable_arg_sort()
index()
make_light_axis_view()
out_edges()
in_edges()
num_vertices()
vertices()
adjacent_vertices()
num_leaves()
num_children()
category()
root()
parent()
is_leaf()
parents()
leaves_to_root_iterator()
root_to_leaves_iterator()
leaves_iterator()
ancestors()
edge_from_index()
children()
child()
num_edges()
edges()
find_region()
lowest_common_ancestor()
add_vertex()
add_vertices()
add_edge()
remove_edge()
set_edge()
parfor()
extend()
unreachable()
hg::accumulator_argmax
make_accumulator()
get_output_shape()
hg::accumulator_argmin
hg::accumulator_counter
hg::accumulator_first
hg::accumulator_last
hg::accumulator_max
init_value()
reduce()
hg::accumulator_mean
hg::accumulator_min
hg::accumulator_prod
hg::accumulator_sum
hg::assesser_fragmentation_optimal_cut
assesser_fragmentation_optimal_cut()
fragmentation_curve()
optimal_number_of_regions()
optimal_score()
optimal_partition()
straightened_altitudes()
hg::COMPILE_ERROR
hg::counting_iterator
self_type
counting_iterator()
increment()
decrement()
advance()
distance_to()
equal()
dereference()
hg::forward_iterator_facade
value_type
difference_type
reference
pointer
iterator_category
operator*
operator++
operator==
operator!=
hg::fragmentation_curve
num_regions_ground_truth()
scores()
num_regions()
num_regions_normalized()
hg::hierarchy_aligner
hierarchy_aligner()
align_hierarchy()
hg::horizontal_cut_explorer
tree_type
horizontal_cut_explorer()
num_cuts()
num_regions_cut()
num_regions_cuts()
altitude_cut()
altitude_cuts()
horizontal_cut_from_index()
horizontal_cut_from_altitude()
horizontal_cut_from_num_regions()
hg::horizontal_cut_nodes
horizontal_cut_nodes()
labelisation_leaves()
graph_cut()
nodes
altitude
hg::incremental_watershed_cut
incremental_watershed_cut()
add_seeds()
remove_seeds()
get_labeling()
hg::indexed_edge
indexed_edge()
operator edge_index_t()
operator std::pair< vertex_descriptor, vertex_descriptor >()
second
index
hg::irange
irange()
begin()
end()
hg::iterator_wrapper
iterator_wrapper()
hg::logger
callback_list
trace_enabled()
callbacks()
emit()
MAX_MSG_SIZE
hg::minimum_spanning_tree_result
mst
mst_edge_map
hg::node_weighted_tree
altitudes
hg::node_weighted_tree_and_mst
hg::pink_graph
graph
shape
vertex_weights
edge_weights
hg::random_iterator_facade
operator[]()
operator--
operator<=
operator<
operator>=
operator>
operator-
operator+
hg::region_adjacency_graph
rag
vertex_map
edge_map
hg::remapped_tree
node_map
hg::scorer_partition_BCE
score()
hg::scorer_partition_DCovering
hg::scorer_partition_DHamming
hg::supervertex_hierarchy
supervertex_labelisation
hg::transform_forward_iterator
transform_forward_iterator()
Contributing